Last updated on 2025-09-13 00:51:10 CEST.
| Package | ERROR | OK |
|---|---|---|
| otargen | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 2.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(otargen)
>
> test_check("otargen")
\ Sending GraphQL request...
x Sending GraphQL request... [5s]
[ FAIL 1 | WARN 0 | SKIP 30 | PASS 1 ]
══ Skipped tests (30) ══════════════════════════════════════════════════════════
• On CRAN (30): 'test_GWASColocQuery.R:2:3', 'test_adverseEventsQuery.R:2:3',
'test_chemblQuery.R:2:3', 'test_clinVarQuery.R:2:3',
'test_compGenomicsQuery.R:2:3', 'test_depMapQuery.R:2:3',
'test_europePMCQuery.R:2:3', 'test_geneBurdenQuery.R:2:3',
'test_geneOntologyQuery.R:2:3', 'test_geneticConstraintQuery.R:2:3',
'test_genomicsEnglandQuery.R:2:3', 'test_hallmarksQuery.R:2:3',
'test_interactionsQuery.R:2:3', 'test_knownDrugsChemblQuery.R:2:3',
'test_knownDrugsGeneQuery.R:2:3', 'test_mechanismsOfActionQuery.R:2:3',
'test_mousePhenotypesQuery.R:2:3', 'test_orphanetQuery.R:2:3',
'test_pathwaysQuery.R:2:3', 'test_pharmacogenomicsChemblQuery.R:2:3',
'test_pharmacogenomicsGeneQuery.R:2:3',
'test_pharmacogenomicsVariantQuery.R:2:3', 'test_qtlCredibleSetsQuery.R:2:3',
'test_safetyQuery.R:2:3', 'test_sharedTraitStudiesQuery.R:2:3',
'test_uniProtVariantsQuery.R:2:3', 'test_uniprotLiteratureQuery.R:2:3',
'test_variantEffectPredictorQuery.R:2:3', 'test_variantEffectQuery.R:2:3',
'test_variantsQuery.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_gwasCredibleSetsQuery.R:10:3'): gwasCredibleSetsQuery returns expected results ──
Error in `gwasCredibleSetsQuery(ensemblId = ensemblId, efoId = efoId, size = size)`: GraphQL query failed. HTTP status: 502
Backtrace:
▆
1. └─otargen::gwasCredibleSetsQuery(...) at test_gwasCredibleSetsQuery.R:10:3
[ FAIL 1 | WARN 0 | SKIP 30 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64