Last updated on 2025-09-13 00:51:17 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| bigrquery | 13 | ||
| dbplyr | 1 | 2 | 10 |
| diffviewer | 13 | ||
| downlit | 13 | ||
| dplyr | 2 | 8 | 3 |
| dtplyr | 2 | 11 | |
| ellmer | 13 | ||
| evaluate | 13 | ||
| generics | 13 | ||
| ggvis | 4 | 9 | |
| haven | 3 | 10 | |
| httr | 4 | 9 | |
| httr2 | 13 | ||
| isoband | 13 | ||
| mockery | 13 | ||
| modelr | 1 | 12 | |
| multidplyr | 13 | ||
| nasaweather | 13 | ||
| odbc | 2 | 11 | |
| pkgdown | 13 | ||
| pool | 13 | ||
| profvis | 13 | ||
| purrr | 13 | ||
| roxygen2 | 13 | ||
| rvest | 13 | ||
| S7 | 10 | 3 | |
| stringr | 1 | 12 | |
| testthat | 12 | 1 | |
| tidyr | 10 | 3 | |
| waldo | 13 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 2.5.0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
arrange.tbl_lazy.Rd: arrange, show_query
backend-hana.Rd: copy_to
collapse.tbl_sql.Rd: collapse, compute, collect
complete.tbl_lazy.Rd: show_query
copy_inline.Rd: copy_to
copy_to.src_sql.Rd: copy_to, show_query
count.tbl_lazy.Rd: count, tally
db-sql.Rd: copy_to
dbplyr-slice.Rd: slice_min, slice_max, slice_sample
distinct.tbl_lazy.Rd: distinct, show_query
expand.tbl_lazy.Rd: show_query
filter.tbl_lazy.Rd: show_query
get_returned_rows.Rd: rows_insert, rows_append, rows_update,
rows_upsert, rows_delete
group_by.tbl_lazy.Rd: group_by
head.tbl_lazy.Rd: show_query
join.tbl_sql.Rd: join, show_query
memdb_frame.Rd: !!, !!!, .data, .env
mutate.tbl_lazy.Rd: mutate, transmute, show_query
nycflights13.Rd: src_postgres
pivot_wider.tbl_lazy.Rd: expand
pull.tbl_sql.Rd: pull
replace_na.tbl_lazy.Rd: show_query
rows-db.Rd: rows_insert, rows_append, rows_update, rows_patch,
rows_upsert, rows_delete, tbl, compute
select.tbl_lazy.Rd: select, rename, relocate
summarise.tbl_lazy.Rd: summarise, show_query
tbl.src_dbi.Rd: compute, collect, show_query, explain, do
win_over.Rd: group_by, arrange
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.5.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [97s/82s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dbplyr)
>
> test_check("dbplyr")
Starting 2 test processes
[ FAIL 5 | WARN 0 | SKIP 374 | PASS 1553 ]
══ Skipped tests (374) ═════════════════════════════════════════════════════════
• Need at least two srcs to compare (5): 'test-verb-compute.R:34:3',
'test-verb-copy-to.R:18:3', 'test-verb-copy-to.R:27:3',
'test-verb-set-ops.R:49:3', 'test-verb-set-ops.R:93:3'
• No MariaDB (5): 'test-backend-mysql.R:104:3', 'test-backend-mysql.R:109:3',
'test-backend-mysql.R:114:3', 'test-backend-mysql.R:125:3',
'test-backend-mysql.R:153:3'
• No mssql (13): 'test-backend-mssql.R:411:3', 'test-backend-mssql.R:443:3',
'test-backend-mssql.R:462:3', 'test-backend-mssql.R:478:3',
'test-backend-mssql.R:504:3', 'test-backend-mssql.R:531:3',
'test-backend-mssql.R:555:3', 'test-backend-mssql.R:580:3',
'test-backend-mssql.R:606:3', 'test-backend-mssql.R:633:3',
'test-backend-mssql.R:658:3', 'test-backend-mssql.R:685:3',
'test-backend-mssql.R:710:3'
• No postgres (9): 'test-backend-postgres.R:216:3',
'test-backend-postgres.R:224:3', 'test-backend-postgres.R:231:3',
'test-backend-postgres.R:245:3', 'test-backend-postgres.R:305:3',
'test-backend-postgres.R:320:3', 'test-backend-postgres.R:375:3',
'test-backend-postgres.R:434:3', 'test-verb-joins.R:103:3'
• On CRAN (336): 'test-backend-access.R:37:3', 'test-backend-access.R:78:3',
'test-backend-hana.R:4:3', 'test-backend-hana.R:17:3',
'test-backend-hive.R:13:3', 'test-backend-impala.R:22:3',
'test-backend-.R:18:3', 'test-backend-.R:75:3', 'test-backend-.R:84:3',
'test-backend-.R:90:3', 'test-backend-.R:107:3', 'test-backend-.R:170:3',
'test-backend-.R:182:3', 'test-backend-mysql.R:49:3',
'test-backend-mysql.R:73:3', 'test-backend-oracle.R:23:3',
'test-backend-oracle.R:31:3', 'test-backend-oracle.R:43:3',
'test-backend-oracle.R:59:3', 'test-backend-oracle.R:76:3',
'test-backend-oracle.R:101:3', 'test-backend-postgres.R:55:3',
'test-backend-postgres.R:79:3', 'test-backend-postgres.R:109:3',
'test-backend-postgres.R:124:3', 'test-backend-postgres.R:137:3',
'test-backend-postgres.R:149:3', 'test-backend-postgres.R:165:3',
'test-backend-postgres.R:199:3', 'test-backend-redshift.R:51:3',
'test-backend-redshift.R:76:3', 'test-backend-redshift.R:91:3',
'test-backend-mssql.R:76:3', 'test-backend-mssql.R:117:3',
'test-backend-mssql.R:137:3', 'test-backend-mssql.R:159:3',
'test-backend-mssql.R:174:3', 'test-backend-mssql.R:207:3',
'test-backend-mssql.R:222:3', 'test-backend-mssql.R:228:3',
'test-backend-mssql.R:240:3', 'test-backend-mssql.R:250:3',
'test-backend-mssql.R:262:3', 'test-backend-mssql.R:285:3',
'test-backend-mssql.R:307:3', 'test-backend-mssql.R:327:3',
'test-backend-mssql.R:350:3', 'test-backend-mssql.R:370:3',
'test-backend-mssql.R:386:3', 'test-backend-mssql.R:398:3',
'test-backend-mssql.R:405:3', 'test-backend-mssql.R:430:3',
'test-backend-spark-sql.R:16:3', 'test-backend-spark-sql.R:31:3',
'test-backend-snowflake.R:17:3', 'test-backend-snowflake.R:180:3',
'test-backend-snowflake.R:190:3', 'test-backend-sqlite.R:54:3',
'test-backend-sqlite.R:60:3', 'test-backend-sqlite.R:108:3',
'test-backend-teradata.R:56:3', 'test-backend-teradata.R:63:3',
'test-backend-teradata.R:69:3', 'test-backend-teradata.R:79:3',
'test-backend-teradata.R:86:3', 'test-backend-teradata.R:93:3',
'test-build-sql.R:3:3', 'test-build-sql.R:58:3', 'test-build-sql.R:70:3',
'test-db-sql.R:8:3', 'test-db-sql.R:28:3', 'test-db-io.R:6:3',
'test-db-io.R:24:3', 'test-db-io.R:49:3', 'test-ident.R:14:3',
'test-lazy-join-query.R:18:3', 'test-lazy-select-query.R:4:3',
'test-escape.R:112:3', 'test-escape.R:123:3', 'test-pillar.R:2:3',
'test-query-join.R:6:3', 'test-query-join.R:16:3', 'test-query-join.R:25:3',
'test-query-join.R:32:3', 'test-query-join.R:40:3',
'test-query-semi-join.R:4:3', 'test-query-semi-join.R:11:3',
'test-query-select.R:7:3', 'test-query-select.R:16:3',
'test-query-select.R:20:3', 'test-query-set-op.R:5:3',
'test-query-set-op.R:10:3', 'test-schema.R:2:3', 'test-sql-build.R:3:3',
'test-sql.R:8:3', 'test-table-name.R:2:3', 'test-table-name.R:14:3',
'test-table-name.R:83:3', 'test-table-name.R:93:3', 'test-tbl-lazy.R:7:3',
'test-tbl-lazy.R:11:3', 'test-tbl-lazy.R:22:3', 'test-tbl-lazy.R:45:3',
'test-tbl-lazy.R:52:3', 'test-tbl-sql.R:33:3', 'test-tbl-sql.R:58:3',
'test-tbl-sql.R:68:3', 'test-rows.R:7:3', 'test-rows.R:53:3',
'test-rows.R:66:3', 'test-rows.R:121:3', 'test-rows.R:162:3',
'test-rows.R:193:3', 'test-rows.R:222:3', 'test-rows.R:230:3',
'test-rows.R:277:3', 'test-rows.R:317:3', 'test-rows.R:337:3',
'test-rows.R:352:3', 'test-rows.R:436:3', 'test-rows.R:477:3',
'test-rows.R:524:3', 'test-rows.R:542:3', 'test-rows.R:590:3',
'test-rows.R:616:3', 'test-rows.R:657:3', 'test-rows.R:699:3',
'test-rows.R:743:3', 'test-rows.R:781:3', 'test-rows.R:835:3',
'test-rows.R:875:3', 'test-rows.R:916:3', 'test-rows.R:962:3',
'test-rows.R:978:3', 'test-tidyeval.R:78:3',
'test-translate-sql-conditional.R:3:3',
'test-translate-sql-conditional.R:10:3',
'test-translate-sql-conditional.R:15:3',
'test-translate-sql-conditional.R:27:3',
'test-translate-sql-conditional.R:62:3',
'test-translate-sql-conditional.R:70:3',
'test-translate-sql-conditional.R:165:3',
'test-translate-sql-conditional.R:234:3',
'test-translate-sql-conditional.R:251:3',
'test-translate-sql-conditional.R:283:3',
'test-translate-sql-conditional.R:290:3', 'test-tidyeval-across.R:57:3',
'test-tidyeval-across.R:101:3', 'test-tidyeval-across.R:222:3',
'test-tidyeval-across.R:229:3', 'test-tidyeval-across.R:237:3',
'test-tidyeval-across.R:371:3', 'test-tidyeval-across.R:380:3',
'test-tidyeval-across.R:387:3', 'test-tidyeval-across.R:430:3',
'test-tidyeval-across.R:447:3', 'test-tidyeval-across.R:463:3',
'test-tidyeval-across.R:470:3', 'test-tidyeval-across.R:477:3',
'test-tidyeval-across.R:512:3', 'test-tidyeval-across.R:540:3',
'test-tidyeval-across.R:548:3', 'test-tidyeval-across.R:628:3',
'test-tidyeval-across.R:634:3', 'test-tidyeval-across.R:640:3',
'test-tidyeval-across.R:650:3', 'test-translate-sql-cut.R:103:3',
'test-translate-sql-cut.R:146:3', 'test-translate-sql-quantile.R:3:3',
'test-translate-sql-helpers.R:2:3', 'test-translate-sql-helpers.R:14:3',
'test-translate-sql-helpers.R:30:3', 'test-translate-sql-helpers.R:47:3',
'test-translate-sql-helpers.R:51:3', 'test-translate-sql-helpers.R:88:3',
'test-translate-sql-helpers.R:114:3', 'test-translate-sql-string.R:15:3',
'test-translate-sql.R:6:3', 'test-translate-sql.R:17:3',
'test-translate-sql-window.R:102:3', 'test-translate-sql-window.R:151:3',
'test-translate-sql-window.R:158:3', 'test-translate-sql-window.R:209:3',
'test-translate-sql-window.R:230:3', 'test-verb-arrange.R:16:3',
'test-verb-arrange.R:21:3', 'test-verb-arrange.R:45:3',
'test-verb-arrange.R:64:3', 'test-verb-compute.R:58:3',
'test-verb-compute.R:107:3', 'test-verb-compute.R:116:3',
'test-verb-compute.R:125:3', 'test-verb-copy-to.R:55:3',
'test-verb-copy-to.R:71:3', 'test-verb-copy-to.R:94:3',
'test-verb-copy-to.R:102:3', 'test-verb-copy-to.R:128:3',
'test-verb-count.R:4:3', 'test-verb-count.R:64:3', 'test-verb-do.R:33:3',
'test-verb-do.R:71:3', 'test-verb-distinct.R:149:3',
'test-verb-distinct.R:191:3', 'test-verb-distinct.R:200:3',
'test-verb-fill.R:45:3', 'test-verb-fill.R:58:3', 'test-verb-fill.R:71:3',
'test-verb-fill.R:84:3', 'test-verb-fill.R:98:3', 'test-verb-fill.R:104:3',
'test-verb-expand.R:7:3', 'test-verb-expand.R:19:3',
'test-verb-expand.R:24:3', 'test-verb-expand.R:30:3',
'test-verb-expand.R:50:3', 'test-verb-expand.R:54:3',
'test-verb-expand.R:58:3', 'test-verb-expand.R:63:3',
'test-verb-expand.R:104:3', 'test-verb-expand.R:110:3',
'test-verb-expand.R:132:3', 'test-verb-group_by.R:12:3',
'test-verb-group_by.R:19:3', 'test-verb-group_by.R:26:3',
'test-verb-group_by.R:34:3', 'test-verb-group_by.R:157:3',
'test-verb-filter.R:22:3', 'test-verb-filter.R:57:3',
'test-verb-filter.R:63:3', 'test-verb-filter.R:170:3',
'test-verb-filter.R:186:3', 'test-verb-filter.R:221:3',
'test-verb-filter.R:295:3', 'test-verb-filter.R:331:3',
'test-verb-filter.R:341:3', 'test-verb-mutate.R:30:3',
'test-verb-mutate.R:43:3', 'test-verb-mutate.R:57:3',
'test-verb-mutate.R:64:3', 'test-verb-mutate.R:105:3',
'test-verb-mutate.R:129:3', 'test-verb-mutate.R:156:3',
'test-verb-mutate.R:176:3', 'test-verb-mutate.R:188:3',
'test-verb-mutate.R:416:3', 'test-verb-mutate.R:423:3',
'test-verb-mutate.R:474:3', 'test-verb-mutate.R:481:3',
'test-verb-mutate.R:488:3', 'test-verb-pivot-longer.R:13:3',
'test-verb-pivot-longer.R:31:3', 'test-verb-pivot-longer.R:40:3',
'test-verb-pivot-longer.R:44:3', 'test-verb-pivot-longer.R:81:3',
'test-verb-pivot-longer.R:88:3', 'test-verb-pivot-longer.R:142:3',
'test-verb-pivot-longer.R:158:3', 'test-verb-pivot-longer.R:235:3',
'test-verb-pivot-longer.R:251:3', 'test-verb-pivot-longer.R:259:3',
'test-verb-joins.R:31:3', 'test-verb-joins.R:54:3', 'test-verb-joins.R:71:3',
'test-verb-joins.R:172:3', 'test-verb-joins.R:284:3',
'test-verb-joins.R:366:3', 'test-verb-joins.R:503:3',
'test-verb-joins.R:537:3', 'test-verb-joins.R:581:3',
'test-verb-joins.R:633:3', 'test-verb-joins.R:653:3',
'test-verb-joins.R:680:3', 'test-verb-joins.R:695:3',
'test-verb-joins.R:858:3', 'test-verb-joins.R:905:3',
'test-verb-joins.R:975:3', 'test-verb-joins.R:985:3',
'test-verb-joins.R:1007:3', 'test-verb-joins.R:1016:3',
'test-verb-joins.R:1026:3', 'test-verb-joins.R:1066:3',
'test-verb-joins.R:1112:3', 'test-verb-joins.R:1317:3',
'test-verb-pull.R:45:3', 'test-verb-select.R:28:3',
'test-verb-select.R:65:3', 'test-verb-select.R:122:3',
'test-verb-select.R:183:3', 'test-verb-select.R:206:3',
'test-verb-select.R:242:3', 'test-verb-select.R:281:3',
'test-verb-select.R:307:3', 'test-verb-select.R:321:3',
'test-verb-select.R:344:3', 'test-verb-select.R:352:3',
'test-verb-select.R:367:3', 'test-verb-set-ops.R:63:3',
'test-verb-pivot-wider.R:23:3', 'test-verb-pivot-wider.R:48:3',
'test-verb-pivot-wider.R:60:3', 'test-verb-pivot-wider.R:237:3',
'test-verb-pivot-wider.R:245:3', 'test-verb-pivot-wider.R:267:3',
'test-verb-pivot-wider.R:279:3', 'test-verb-pivot-wider.R:328:3',
'test-verb-pivot-wider.R:347:3', 'test-verb-pivot-wider.R:378:3',
'test-verb-pivot-wider.R:417:3', 'test-verb-pivot-wider.R:476:3',
'test-verb-pivot-wider.R:481:3', 'test-verb-pivot-wider.R:486:3',
'test-verb-pivot-wider.R:493:3', 'test-verb-pivot-wider.R:500:3',
'test-verb-slice.R:3:3', 'test-verb-slice.R:17:3', 'test-verb-slice.R:27:3',
'test-verb-slice.R:35:3', 'test-verb-slice.R:49:3', 'test-verb-slice.R:64:3',
'test-verb-slice.R:75:3', 'test-verb-slice.R:103:3',
'test-verb-slice.R:118:3', 'test-verb-summarise.R:2:3',
'test-verb-summarise.R:27:3', 'test-verb-summarise.R:50:3',
'test-verb-summarise.R:72:3', 'test-verb-summarise.R:82:3',
'test-verb-summarise.R:119:3', 'test-verb-summarise.R:126:3',
'test-verb-summarise.R:135:3', 'test-verb-summarise.R:146:3',
'test-verb-uncount.R:5:3', 'test-verb-window.R:2:3',
'test-verb-window.R:13:3', 'test-verb-window.R:19:3',
'test-verb-window.R:33:3'
• `grouped_df()` needs a `name_repair` argument (1):
'test-verb-pivot-wider.R:81:3'
• empty test (1): 'test-verb-set-ops.R:110:1'
• identical(Sys.getenv("GITHUB_POSTGRES"), "true") is not TRUE (1):
'test-backend-postgres-old.R:2:3'
• not clear whether test makes sense (2): 'test-verb-arrange.R:2:3',
'test-verb-arrange.R:131:3'
• not yet correctly supported (1): 'test-tidyeval-across.R:272:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-verb-pivot-longer.R:59:3'): can handle missing combinations ────
Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()
Backtrace:
▆
1. ├─tidyr::pivot_longer(...) at test-verb-pivot-longer.R:59:3
2. └─dbplyr:::pivot_longer.tbl_lazy(...)
3. └─tidyr::build_longer_spec(...)
4. └─tidyr:::str_separate(names, names_to, sep = names_sep, error_call = error_call)
5. └─tidyr:::str_split_fixed(...)
6. └─tidyr:::simplifyPieces(pieces, n, fill == "left")
── Error ('test-verb-pivot-longer.R:97:3'): `values_transform` works with single functions (#1284) ──
Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()
Backtrace:
▆
1. ├─... %>% collect() at test-verb-pivot-longer.R:97:3
2. ├─dplyr::collect(.)
3. ├─tidyr::pivot_longer(...)
4. └─dbplyr:::pivot_longer.tbl_lazy(...)
5. └─tidyr::build_longer_spec(...)
6. └─tidyr:::str_separate(names, names_to, sep = names_sep, error_call = error_call)
7. └─tidyr:::str_split_fixed(...)
8. └─tidyr:::simplifyPieces(pieces, n, fill == "left")
── Error ('test-verb-pivot-longer.R:113:3'): `names_ptypes` and `names_transform` ──
Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()
Backtrace:
▆
1. ├─... %>% collect() at test-verb-pivot-longer.R:113:3
2. ├─dplyr::collect(.)
3. ├─tidyr::pivot_longer(...)
4. └─dbplyr:::pivot_longer.tbl_lazy(...)
5. └─tidyr::build_longer_spec(...)
6. └─tidyr:::str_separate(names, names_to, sep = names_sep, error_call = error_call)
7. └─tidyr:::str_split_fixed(...)
8. └─tidyr:::simplifyPieces(pieces, n, fill == "left")
── Error ('test-verb-pivot-longer.R:169:3'): original col order is preserved ───
Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-verb-pivot-longer.R:169:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% colnames()
5. ├─base::colnames(.)
6. │ └─base::is.data.frame(x)
7. ├─tidyr::pivot_longer(., -id, names_to = c(".value", "n"), names_sep = "_")
8. └─dbplyr:::pivot_longer.tbl_lazy(...)
9. └─tidyr::build_longer_spec(...)
10. └─tidyr:::str_separate(names, names_to, sep = names_sep, error_call = error_call)
11. └─tidyr:::str_split_fixed(...)
12. └─tidyr:::simplifyPieces(pieces, n, fill == "left")
── Error ('test-verb-pivot-longer.R:186:3'): .value can be at any position in `names_to` ──
Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()
Backtrace:
▆
1. ├─tidyr::pivot_longer(...) at test-verb-pivot-longer.R:186:3
2. └─dbplyr:::pivot_longer.tbl_lazy(...)
3. └─tidyr::build_longer_spec(...)
4. └─tidyr:::str_separate(names, names_to, sep = names_sep, error_call = error_call)
5. └─tidyr:::str_split_fixed(...)
6. └─tidyr:::simplifyPieces(pieces, n, fill == "left")
[ FAIL 5 | WARN 0 | SKIP 374 | PASS 1553 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 2, NOTE: 8, OK: 3
Version: 1.1.4
Check: compiled code
Result: NOTE
File ‘dplyr/libs/dplyr.so’:
Found non-API calls to R: ‘LEVELS’, ‘OBJECT’, ‘PRVALUE’,
‘R_shallow_duplicate_attr’, ‘Rf_allocSExp’, ‘SET_PRCODE’,
‘SET_PRENV’, ‘SET_PRVALUE’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64
Version: 1.1.4
Check: compiled code
Result: NOTE
File 'dplyr/libs/x64/dplyr.dll':
Found non-API calls to R: 'LEVELS', 'OBJECT', 'PRVALUE',
'R_shallow_duplicate_attr', 'Rf_allocSExp', 'SET_PRCODE',
'SET_PRENV', 'SET_PRVALUE'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavor: r-devel-windows-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in 'dplyr-Ex.R' failed
The error most likely occurred in:
> ### Name: nest_by
> ### Title: Nest by one or more variables
> ### Aliases: nest_by
> ### Keywords: internal
>
> ### ** Examples
>
> # After nesting, you get one row per group
> iris %>% nest_by(Species)
# A tibble: 3 × 2
# Rowwise: Species
Species data
<fct> <list<tibble[,4]>>
1 setosa [50 × 4]
2 versicolor [50 × 4]
3 virginica [50 × 4]
> starwars %>% nest_by(species)
# A tibble: 38 × 2
# Rowwise: species
species data
<chr> <list<tibble[,13]>>
1 Aleena [1 × 13]
2 Besalisk [1 × 13]
3 Cerean [1 × 13]
4 Chagrian [1 × 13]
5 Clawdite [1 × 13]
6 Droid [6 × 13]
7 Dug [1 × 13]
8 Ewok [1 × 13]
9 Geonosian [1 × 13]
10 Gungan [3 × 13]
# ℹ 28 more rows
>
> # The output is grouped by row, which makes modelling particularly easy
> models <- mtcars %>%
+ nest_by(cyl) %>%
+ mutate(model = list(lm(mpg ~ wt, data = data)))
> models
# A tibble: 3 × 3
# Rowwise: cyl
cyl data model
<dbl> <list<tibble[,10]>> <list>
1 4 [11 × 10] <lm>
2 6 [7 × 10] <lm>
3 8 [14 × 10] <lm>
>
> models %>% summarise(rsq = summary(model)$r.squared)
`summarise()` has grouped output by 'cyl'. You can override using the `.groups`
argument.
# A tibble: 3 × 2
# Groups: cyl [3]
cyl rsq
<dbl> <dbl>
1 4 0.509
2 6 0.465
3 8 0.423
> ## Don't show:
> if (requireNamespace("broom", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+
+ # This is particularly elegant with the broom functions
+ models %>% summarise(broom::glance(model))
+ models %>% reframe(broom::tidy(model))
+ ## Don't show:
+ }) # examplesIf
> models %>% summarise(broom::glance(model))
Error in `summarise()`:
ℹ In argument: `broom::glance(model)`.
ℹ In row 1.
Caused by error in `ll()`:
! could not find function "ll"
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. ├─models %>% summarise(broom::glance(model))
7. ├─dplyr::summarise(., broom::glance(model))
8. ├─dplyr:::summarise.rowwise_df(., broom::glance(model))
9. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─dplyr (local) FUN(X[[i]], ...)
14. │ └─mask$eval_all_summarise(quo)
15. │ └─dplyr (local) eval()
16. ├─broom::glance(model)
17. ├─broom:::glance.lm(model)
18. │ ├─base::with(...)
19. │ └─base::with.default(...)
20. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
21. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
22. │ └─tibble::tibble(...)
23. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
24. │ └─rlang::eval_tidy(xs[[j]], mask)
25. ├─stats::AIC(x)
26. ├─stats:::AIC.default(x)
27. └─base::.handleSimpleError(...)
28. └─dplyr (local) h(simpleError(msg, call))
29. └─dplyr (local) handler(cnd)
30. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'base.Rmd' using rmarkdown
--- finished re-building 'base.Rmd'
--- re-building 'colwise.Rmd' using rmarkdown
--- finished re-building 'colwise.Rmd'
--- re-building 'dplyr.Rmd' using rmarkdown
--- finished re-building 'dplyr.Rmd'
--- re-building 'grouping.Rmd' using rmarkdown
--- finished re-building 'grouping.Rmd'
--- re-building 'in-packages.Rmd' using rmarkdown
--- finished re-building 'in-packages.Rmd'
--- re-building 'programming.Rmd' using rmarkdown
--- finished re-building 'programming.Rmd'
--- re-building 'rowwise.Rmd' using rmarkdown
Quitting from rowwise.Rmd:252-256 [unnamed-chunk-25]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rowwise.Rmd' failed with diagnostics:
ℹ In argument: `broom::glance(mod)`.
ℹ In row 1.
Caused by error in `ll()`:
! could not find function "ll"
--- failed re-building 'rowwise.Rmd'
--- re-building 'two-table.Rmd' using rmarkdown
--- finished re-building 'two-table.Rmd'
--- re-building 'window-functions.Rmd' using rmarkdown
--- finished re-building 'window-functions.Rmd'
SUMMARY: processing the following file failed:
'rowwise.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.4
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-release-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 1.3.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
arrange.dtplyr_step.Rd: arrange
count.dtplyr_step.Rd: count
distinct.dtplyr_step.Rd: distinct
filter.dtplyr_step.Rd: arrange
group_by.dtplyr_step.Rd: group_by, ungroup
group_modify.dtplyr_step.Rd: group_map, group_modify
intersect.dtplyr_step.Rd: union_all
lazy_dt.Rd: collect, pull, select
left_join.dtplyr_step.Rd: left_join, right_join, inner_join,
full_join, anti_join, semi_join
mutate.dtplyr_step.Rd: mutate
relocate.dtplyr_step.Rd: relocate
rename.dtplyr_step.Rd: rename, rename_with
select.dtplyr_step.Rd: select
slice.dtplyr_step.Rd: slice
summarise.dtplyr_step.Rd: summarise
transmute.dtplyr_step.Rd: transmute
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 0.4.9
Check: for unstated dependencies in ‘demo’
Result: NOTE
'library' or 'require' calls not declared from:
‘nasaweather’ ‘tourr’
'data(package=)' call not declared from: ‘ggplot2’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 2.5.5
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 4, OK: 9
Version: 1.4.7
Check: for unstated dependencies in ‘demo’
Result: NOTE
'::' or ':::' import not declared from: ‘rstudioapi’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 0.2.7
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.7
Check: compiled code
Result: NOTE
File ‘isoband/libs/isoband.so’:
Found non-API call to R: ‘SETLENGTH’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64
Version: 0.2.7
Check: compiled code
Result: NOTE
File 'isoband/libs/x64/isoband.dll':
Found non-API call to R: 'SETLENGTH'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.1.11
Check: examples
Result: ERROR
Running examples in 'modelr-Ex.R' failed
The error most likely occurred in:
> ### Name: permute
> ### Title: Generate 'n' permutation replicates.
> ### Aliases: permute permute_
>
> ### ** Examples
>
>
> library(purrr)
> perms <- permute(mtcars, 100, mpg)
>
> models <- map(perms$perm, ~ lm(mpg ~ wt, data = .))
> glanced <- map_df(models, broom::glance, .id = "id")
Error in `map()`:
ℹ In index: 1.
Caused by error in `ll()`:
! could not find function "ll"
Backtrace:
▆
1. ├─purrr::map_df(models, broom::glance, .id = "id")
2. │ └─purrr::map(.x, .f, ...)
3. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
4. │ ├─purrr:::with_indexed_errors(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ ├─purrr:::call_with_cleanup(...)
7. │ ├─generics (local) .f(.x[[i]], ...)
8. │ └─broom:::glance.lm(.x[[i]], ...)
9. │ ├─base::with(...)
10. │ └─base::with.default(...)
11. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
12. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
13. │ └─tibble::tibble(...)
14. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
15. │ └─rlang::eval_tidy(xs[[j]], mask)
16. ├─stats::AIC(x)
17. ├─stats:::AIC.default(x)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 1.6.3
Check: installed package size
Result: NOTE
installed size is 12.8Mb
sub-directories of 1Mb or more:
libs 11.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.2.0
Check: compiled code
Result: NOTE
File ‘S7/libs/S7.so’:
Found non-API calls to R: ‘FORMALS’, ‘Rf_allocSExp’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64
Version: 0.2.0
Check: compiled code
Result: NOTE
File 'S7/libs/x64/S7.dll':
Found non-API calls to R: 'FORMALS', 'Rf_allocSExp'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 1, OK: 12
Version: 1.5.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
str_replace.Rd: stri_replace
str_split.Rd: stri_split
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-release-linux-x86_64
Current CRAN status: NOTE: 12, OK: 1
Version: 3.2.3
Check: compiled code
Result: NOTE
File ‘testthat/libs/testthat.so’:
Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘FORMALS’, ‘SET_BODY’,
‘SET_CLOENV’, ‘SET_FORMALS’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64
Version: 3.2.3
Check: compiled code
Result: NOTE
File 'testthat/libs/x64/testthat.dll':
Found non-API calls to R: 'BODY', 'CLOENV', 'FORMALS', 'SET_BODY',
'SET_CLOENV', 'SET_FORMALS'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 3.2.3
Check: installed package size
Result: NOTE
installed size is 8.9Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 5.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 1.3.1
Check: compiled code
Result: NOTE
File ‘tidyr/libs/tidyr.so’:
Found non-API call to R: ‘DATAPTR’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64
Version: 1.3.1
Check: compiled code
Result: NOTE
File 'tidyr/libs/x64/tidyr.dll':
Found non-API call to R: 'DATAPTR'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13