Last updated on 2025-11-01 12:50:23 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/119s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.671, system: 0.062, elapsed: 2.298 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.311, system: 0.135, elapsed: 11.469 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.015, elapsed: 0.236 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.049, system: 0.253, elapsed: 5.672 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.007, elapsed: 0.243 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.959, system: 0.499, elapsed: 20.636 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.749, system: 0.077, elapsed: 2.557 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.586, system: 0.239, elapsed: 13.359 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.017, elapsed: 0.317 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.058, system: 0.245, elapsed: 5.922 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.007, elapsed: 0.225 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.320, system: 0.617, elapsed: 23.197 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.819, system: 0.077, elapsed: 2.603 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.295, system: 0.148, elapsed: 15.903 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.180, system: 0.013, elapsed: 0.235 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.179, system: 0.313, elapsed: 6.702 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.010, elapsed: 0.262 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.295, system: 0.260, elapsed: 1.331 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.573, system: 0.854, elapsed: 27.972 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.651, system: 0.049, elapsed: 2.674 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.484, system: 0.174, elapsed: 13.478 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.021, elapsed: 0.362 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.357, system: 0.378, elapsed: 6.815 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.012, elapsed: 0.235 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.044, system: 0.852, elapsed: 14.515 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.568, system: 1.536, elapsed: 39.152 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/119s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.657, system: 0.060, elapsed: 2.475 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.686, system: 0.278, elapsed: 15.478 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.018, elapsed: 0.297 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.844, system: 0.276, elapsed: 5.263 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.010, elapsed: 0.210 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.113, system: 0.674, elapsed: 24.683 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.833, system: 0.089, elapsed: 2.589 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.725, system: 0.300, elapsed: 12.563 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.017, elapsed: 0.267 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.002, system: 0.269, elapsed: 6.122 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.012, elapsed: 0.312 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.499, system: 0.736, elapsed: 22.584 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.801, system: 0.077, elapsed: 3.155 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.487, system: 0.171, elapsed: 11.473 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.015, elapsed: 0.222 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.653, system: 0.248, elapsed: 4.625 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.022, elapsed: 0.357 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.170, system: 0.275, elapsed: 1.194 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.124, system: 0.852, elapsed: 21.946 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.888, system: 0.098, elapsed: 2.419 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.719, system: 0.293, elapsed: 13.452 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.013, elapsed: 0.283 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.689, system: 0.195, elapsed: 5.498 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.007, elapsed: 0.244 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.683, system: 0.479, elapsed: 19.777 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.019, system: 1.126, elapsed: 42.645 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64