Last updated on 2025-09-13 00:51:28 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/134s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.473, system: 0.034, elapsed: 2.876 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.081, system: 0.092, elapsed: 18.563 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.013, elapsed: 0.416 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.708, system: 0.185, elapsed: 6.600 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.316 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.160, system: 0.349, elapsed: 29.928 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.490, system: 0.035, elapsed: 2.694 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.996, system: 0.084, elapsed: 14.899 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.012, elapsed: 0.286 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.737, system: 0.163, elapsed: 6.305 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.003, elapsed: 0.288 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.094, system: 0.314, elapsed: 25.345 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.525, system: 0.030, elapsed: 2.724 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.039, system: 0.061, elapsed: 15.233 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.351 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.772, system: 0.180, elapsed: 6.007 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.004, elapsed: 0.245 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.141, system: 0.213, elapsed: 1.156 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.455, system: 0.521, elapsed: 26.792 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.463, system: 0.030, elapsed: 2.553 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.048, system: 0.053, elapsed: 14.655 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.365 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.749, system: 0.167, elapsed: 6.232 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.265 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.224, system: 0.446, elapsed: 18.700 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.511, system: 0.743, elapsed: 43.923 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/134s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.538, system: 0.040, elapsed: 2.393 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.967, system: 0.091, elapsed: 14.887 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.014, elapsed: 0.527 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.604, system: 0.187, elapsed: 9.968 seconds]
Computing values for grid cells...
... done. [user: 0.153, system: 0.003, elapsed: 0.401 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.989, system: 0.356, elapsed: 29.328 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.470, system: 0.027, elapsed: 3.615 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.902, system: 0.065, elapsed: 19.600 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.012, elapsed: 0.363 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.705, system: 0.166, elapsed: 6.798 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.004, elapsed: 0.221 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.972, system: 0.297, elapsed: 31.829 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.462, system: 0.028, elapsed: 2.104 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.869, system: 0.051, elapsed: 13.373 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.010, elapsed: 0.308 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.545, system: 0.156, elapsed: 5.850 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.014, elapsed: 0.290 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.071, system: 0.246, elapsed: 1.124 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.929, system: 0.534, elapsed: 24.009 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.498, system: 0.030, elapsed: 2.523 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.902, system: 0.094, elapsed: 13.077 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.016, elapsed: 0.345 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.605, system: 0.216, elapsed: 6.136 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.005, elapsed: 0.284 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.105, system: 0.553, elapsed: 17.458 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.126, system: 0.944, elapsed: 40.947 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64