Last updated on 2025-07-09 00:49:01 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/138s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.485, system: 0.053, elapsed: 1.736 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.976, system: 0.106, elapsed: 10.832 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.016, elapsed: 0.311 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.787, system: 0.200, elapsed: 4.903 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.002, elapsed: 0.184 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.137, system: 0.401, elapsed: 18.618 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.496, system: 0.041, elapsed: 2.107 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.118, system: 0.104, elapsed: 16.723 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.402 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.841, system: 0.184, elapsed: 8.582 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.341 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.343, system: 0.364, elapsed: 29.032 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.565, system: 0.038, elapsed: 3.081 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.094, system: 0.081, elapsed: 15.967 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.354 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.771, system: 0.190, elapsed: 9.929 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.473 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.166, system: 0.232, elapsed: 1.977 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.577, system: 0.582, elapsed: 33.143 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.453, system: 0.033, elapsed: 3.495 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.046, system: 0.066, elapsed: 20.341 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.011, elapsed: 0.402 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.800, system: 0.170, elapsed: 6.913 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.236 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.299, system: 0.453, elapsed: 17.379 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.607, system: 0.766, elapsed: 50.183 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.534, system: 0.041, elapsed: 1.681 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.798, system: 0.064, elapsed: 9.908 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.015, elapsed: 0.372 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.602, system: 0.182, elapsed: 6.237 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.249 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.829, system: 0.326, elapsed: 19.193 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.502, system: 0.034, elapsed: 2.612 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.078, system: 0.082, elapsed: 15.760 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.366 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.551, system: 0.173, elapsed: 5.802 seconds]
Computing values for grid cells...
... done. [user: 0.157, system: 0.002, elapsed: 0.230 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.014, system: 0.325, elapsed: 25.811 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.541, system: 0.028, elapsed: 2.156 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.959, system: 0.054, elapsed: 12.769 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.339 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.526, system: 0.161, elapsed: 6.659 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.327 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.044, system: 0.229, elapsed: 1.151 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.067, system: 0.508, elapsed: 24.487 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.508, system: 0.035, elapsed: 2.562 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.010, system: 0.144, elapsed: 14.060 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.014, elapsed: 0.318 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.554, system: 0.212, elapsed: 5.088 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.010, elapsed: 0.267 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.076, system: 0.501, elapsed: 13.814 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.156, system: 0.950, elapsed: 37.199 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64