Last updated on 2026-08-02 12:52:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.10 | 23.24 | 204.03 | 227.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.10 | 15.40 | 152.27 | 167.67 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.10 | 36.00 | 333.13 | 369.13 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.10 | 16.00 | 133.56 | 149.56 | OK | |
| r-devel-windows-x86_64 | 1.0.10 | 26.00 | 181.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.0.10 | 20.00 | 194.60 | 214.60 | OK | |
| r-release-linux-x86_64 | 1.0.10 | 19.22 | 193.78 | 213.00 | OK | |
| r-release-macos-arm64 | 1.0.10 | 7.00 | 55.00 | 62.00 | OK | |
| r-release-macos-x86_64 | 1.0.10 | 16.00 | 173.00 | 189.00 | OK | |
| r-release-windows-x86_64 | 1.0.10 | 27.00 | 186.00 | 213.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.10 | 6.00 | 45.00 | 51.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.10 | 16.00 | 181.00 | 197.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.10 | 34.00 | 246.00 | 280.00 | OK |
Version: 1.0.10
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0ycq0g’ ‘~/tmp/scratch/Rtmp0z6TWa’
‘~/tmp/scratch/Rtmp0zy4ba’ ‘~/tmp/scratch/Rtmp15kDxm’
‘~/tmp/scratch/Rtmp1DVmBr’ ‘~/tmp/scratch/Rtmp1QTdDw’
‘~/tmp/scratch/Rtmp1g0yrW’ ‘~/tmp/scratch/Rtmp23SIkd’
‘~/tmp/scratch/Rtmp2G69mK’ ‘~/tmp/scratch/Rtmp2I9HMX’
‘~/tmp/scratch/Rtmp2Za33c’ ‘~/tmp/scratch/Rtmp3IwPFu’
‘~/tmp/scratch/Rtmp3LKgpA’ ‘~/tmp/scratch/Rtmp3SBq0q’
‘~/tmp/scratch/Rtmp42pqJ9’ ‘~/tmp/scratch/Rtmp4rAOVu’
‘~/tmp/scratch/Rtmp54KDIS’ ‘~/tmp/scratch/Rtmp5Mhwyh’
‘~/tmp/scratch/Rtmp5VO3OP’ ‘~/tmp/scratch/Rtmp67hjGa’
‘~/tmp/scratch/Rtmp6aNxGR’ ‘~/tmp/scratch/Rtmp6t8F6O’
‘~/tmp/scratch/Rtmp6tGUC3’ ‘~/tmp/scratch/Rtmp6vlKF8’
‘~/tmp/scratch/Rtmp7rkZOi’ ‘~/tmp/scratch/Rtmp7xmip3’
‘~/tmp/scratch/Rtmp8MOzOn’ ‘~/tmp/scratch/Rtmp8nCvs0’
‘~/tmp/scratch/Rtmp91pq3M’ ‘~/tmp/scratch/Rtmp9yUAjU’
‘~/tmp/scratch/RtmpA87zIb’ ‘~/tmp/scratch/RtmpAOoUCo’
‘~/tmp/scratch/RtmpAYxUoU’ ‘~/tmp/scratch/RtmpAlBUzQ’
‘~/tmp/scratch/RtmpAu0fKK’ ‘~/tmp/scratch/RtmpBNmd9p’
‘~/tmp/scratch/RtmpBfDx0e’ ‘~/tmp/scratch/RtmpCVNFB2’
‘~/tmp/scratch/RtmpCm1VcL’ ‘~/tmp/scratch/RtmpDW97i7’
‘~/tmp/scratch/RtmpDj0taE’ ‘~/tmp/scratch/RtmpE7ZVFH’
‘~/tmp/scratch/RtmpEVaHqK’ ‘~/tmp/scratch/RtmpFUWCJh’
‘~/tmp/scratch/RtmpG2xvSA’ ‘~/tmp/scratch/RtmpGIX46V’
‘~/tmp/scratch/RtmpGu4Qzu’ ‘~/tmp/scratch/RtmpHDIewb’
‘~/tmp/scratch/RtmpHbkuA0’ ‘~/tmp/scratch/RtmpHnPRxl’
‘~/tmp/scratch/RtmpINd2KP’ ‘~/tmp/scratch/RtmpIr1YMC’
‘~/tmp/scratch/RtmpIuFLxm’ ‘~/tmp/scratch/RtmpJ79WOs’
‘~/tmp/scratch/RtmpJFMHu9’ ‘~/tmp/scratch/RtmpJeAo9j’
‘~/tmp/scratch/RtmpJl5Brq’ ‘~/tmp/scratch/RtmpJlLrMu’
‘~/tmp/scratch/RtmpJwi8bA’ ‘~/tmp/scratch/RtmpKJo51k’
‘~/tmp/scratch/RtmpKNrt4B’ ‘~/tmp/scratch/RtmpKREIdi’
‘~/tmp/scratch/RtmpLDwXJq’ ‘~/tmp/scratch/RtmpLMpWZu’
‘~/tmp/scratch/RtmpLNZ9TW’ ‘~/tmp/scratch/RtmpMf41Pz’
‘~/tmp/scratch/RtmpMgeoSy’ ‘~/tmp/scratch/RtmpOKZt9v’
‘~/tmp/scratch/RtmpOMQ8Ix’ ‘~/tmp/scratch/RtmpPMJIVG’
‘~/tmp/scratch/RtmpPgEsMX’ ‘~/tmp/scratch/RtmpPuOQCY’
‘~/tmp/scratch/RtmpQ7wyk0’ ‘~/tmp/scratch/RtmpQiLuax’
‘~/tmp/scratch/RtmpR56KH5’ ‘~/tmp/scratch/RtmpR78GLB’
‘~/tmp/scratch/RtmpRA0ilh’ ‘~/tmp/scratch/RtmpS3y06R’
‘~/tmp/scratch/RtmpSGZ804’ ‘~/tmp/scratch/RtmpT3MM6W’
‘~/tmp/scratch/RtmpTIyeRb’ ‘~/tmp/scratch/RtmpTL9VJK’
‘~/tmp/scratch/RtmpTN21H1’ ‘~/tmp/scratch/RtmpToPqQB’
‘~/tmp/scratch/RtmpTrR08G’ ‘~/tmp/scratch/RtmpV65Y7m’
‘~/tmp/scratch/RtmpX6GNR1’ ‘~/tmp/scratch/RtmpXaWQFC’
‘~/tmp/scratch/RtmpXeQZSS’ ‘~/tmp/scratch/RtmpXgueG0’
‘~/tmp/scratch/RtmpZDCah2’ ‘~/tmp/scratch/Rtmpa8rnwd’
‘~/tmp/scratch/RtmpaErptO’ ‘~/tmp/scratch/RtmpaFyltX’
‘~/tmp/scratch/RtmpaLHOUm’ ‘~/tmp/scratch/RtmpaSLmH6’
‘~/tmp/scratch/Rtmpb5eWyo’ ‘~/tmp/scratch/RtmpbKGcDX’
‘~/tmp/scratch/RtmpbWyxBQ’ ‘~/tmp/scratch/Rtmpbh31sv’
‘~/tmp/scratch/RtmpbogXrK’ ‘~/tmp/scratch/RtmpbojBbR’
‘~/tmp/scratch/Rtmpcd7D57’ ‘~/tmp/scratch/RtmpdLR69f’
‘~/tmp/scratch/RtmpdYS5CW’ ‘~/tmp/scratch/RtmpdceLr6’
‘~/tmp/scratch/RtmpeEhQcs’ ‘~/tmp/scratch/RtmpeSzkVK’
‘~/tmp/scratch/RtmpeYOaWk’ ‘~/tmp/scratch/RtmpfsrtCK’
‘~/tmp/scratch/RtmpfyZPxi’ ‘~/tmp/scratch/Rtmpg31KMP’
‘~/tmp/scratch/Rtmpg5Qr88’ ‘~/tmp/scratch/RtmpgRX7Pb’
‘~/tmp/scratch/Rtmpgf89XC’ ‘~/tmp/scratch/RtmpguwojK’
‘~/tmp/scratch/RtmphcL5SE’ ‘~/tmp/scratch/RtmpiUNK0R’
‘~/tmp/scratch/RtmpiUZNE3’ ‘~/tmp/scratch/RtmpinaMbK’
‘~/tmp/scratch/RtmpjGNC27’ ‘~/tmp/scratch/RtmpjK4EIa’
‘~/tmp/scratch/RtmpjKwQgY’ ‘~/tmp/scratch/RtmpjUYpC7’
‘~/tmp/scratch/RtmpjhCcpR’ ‘~/tmp/scratch/RtmpjosfGn’
‘~/tmp/scratch/Rtmpjp946g’ ‘~/tmp/scratch/RtmpjsmoLJ’
‘~/tmp/scratch/RtmpkL8VkJ’ ‘~/tmp/scratch/RtmpkN7Ecl’
‘~/tmp/scratch/RtmpkpoH0b’ ‘~/tmp/scratch/RtmplFDhwy’
‘~/tmp/scratch/RtmplM1mrk’ ‘~/tmp/scratch/RtmplOhgZ0’
‘~/tmp/scratch/RtmpmKP0vw’ ‘~/tmp/scratch/RtmpmVw8Fr’
‘~/tmp/scratch/RtmpmtohLi’ ‘~/tmp/scratch/RtmpmzVPm8’
‘~/tmp/scratch/RtmpnXzB80’ ‘~/tmp/scratch/RtmpoGFseb’
‘~/tmp/scratch/RtmpoaHa60’ ‘~/tmp/scratch/Rtmpp194h2’
‘~/tmp/scratch/Rtmpp5cQK8’ ‘~/tmp/scratch/RtmppPHQNC’
‘~/tmp/scratch/Rtmppi2a6r’ ‘~/tmp/scratch/Rtmpq1HSl6’
‘~/tmp/scratch/RtmpqSa7p0’ ‘~/tmp/scratch/RtmpqSdCJ8’
‘~/tmp/scratch/Rtmpr4KIZ9’ ‘~/tmp/scratch/RtmprBvQ9W’
‘~/tmp/scratch/RtmproFySy’ ‘~/tmp/scratch/RtmpssRr8p’
‘~/tmp/scratch/Rtmpt7E6xF’ ‘~/tmp/scratch/RtmptO6d0t’
‘~/tmp/scratch/Rtmpu5vLEG’ ‘~/tmp/scratch/RtmpuMUNlk’
‘~/tmp/scratch/RtmpucKwYA’ ‘~/tmp/scratch/RtmpumG1id’
‘~/tmp/scratch/RtmpupIsum’ ‘~/tmp/scratch/RtmpuueFb0’
‘~/tmp/scratch/RtmpvMPTFO’ ‘~/tmp/scratch/RtmpvnBt1v’
‘~/tmp/scratch/RtmpwpxRks’ ‘~/tmp/scratch/Rtmpx0K7t4’
‘~/tmp/scratch/RtmpxUAJ3s’ ‘~/tmp/scratch/RtmpxcvC7q’
‘~/tmp/scratch/Rtmpxg0VY0’ ‘~/tmp/scratch/Rtmpy7Nnrz’
‘~/tmp/scratch/RtmpyGyHIw’ ‘~/tmp/scratch/RtmpyQqmuo’
‘~/tmp/scratch/Rtmpyydazr’ ‘~/tmp/scratch/RtmpzzDqKP’
‘~/tmp/scratch/xvfb-run.0529TN’ ‘~/tmp/scratch/xvfb-run.0mNoPI’
‘~/tmp/scratch/xvfb-run.14fh7W’ ‘~/tmp/scratch/xvfb-run.2ofnEo’
‘~/tmp/scratch/xvfb-run.3KyPcv’ ‘~/tmp/scratch/xvfb-run.3bPWMn’
‘~/tmp/scratch/xvfb-run.3nZ48r’ ‘~/tmp/scratch/xvfb-run.4ch0sj’
‘~/tmp/scratch/xvfb-run.4thpR1’ ‘~/tmp/scratch/xvfb-run.6Zhd6j’
‘~/tmp/scratch/xvfb-run.8HsPWT’ ‘~/tmp/scratch/xvfb-run.ARSr16’
‘~/tmp/scratch/xvfb-run.CcHL7y’ ‘~/tmp/scratch/xvfb-run.D6Dxhp’
‘~/tmp/scratch/xvfb-run.Dv1DUT’ ‘~/tmp/scratch/xvfb-run.E2Y6Vo’
‘~/tmp/scratch/xvfb-run.ERJiyv’ ‘~/tmp/scratch/xvfb-run.Fcy0XQ’
‘~/tmp/scratch/xvfb-run.FhzGkZ’ ‘~/tmp/scratch/xvfb-run.HY4sdk’
‘~/tmp/scratch/xvfb-run.HlQPS6’ ‘~/tmp/scratch/xvfb-run.I1wl5D’
‘~/tmp/scratch/xvfb-run.IwKcYK’ ‘~/tmp/scratch/xvfb-run.IzzIjJ’
‘~/tmp/scratch/xvfb-run.JZjEtC’ ‘~/tmp/scratch/xvfb-run.KsaKM0’
‘~/tmp/scratch/xvfb-run.M8y8hy’ ‘~/tmp/scratch/xvfb-run.OPAqdN’
‘~/tmp/scratch/xvfb-run.OV2Jt3’ ‘~/tmp/scratch/xvfb-run.PdTJ3h’
‘~/tmp/scratch/xvfb-run.QHNWTL’ ‘~/tmp/scratch/xvfb-run.QZ2zQH’
‘~/tmp/scratch/xvfb-run.R8JwCU’ ‘~/tmp/scratch/xvfb-run.Slg1i5’
‘~/tmp/scratch/xvfb-run.V7XGUt’ ‘~/tmp/scratch/xvfb-run.YnOkMC’
‘~/tmp/scratch/xvfb-run.Z9f4Ee’ ‘~/tmp/scratch/xvfb-run.ZE7RDE’
‘~/tmp/scratch/xvfb-run.aL5fEj’ ‘~/tmp/scratch/xvfb-run.bEaIxV’
‘~/tmp/scratch/xvfb-run.brLPnJ’ ‘~/tmp/scratch/xvfb-run.cS8JeJ’
‘~/tmp/scratch/xvfb-run.ckyw35’ ‘~/tmp/scratch/xvfb-run.d1XjAw’
‘~/tmp/scratch/xvfb-run.e9anF7’ ‘~/tmp/scratch/xvfb-run.fIMXc8’
‘~/tmp/scratch/xvfb-run.fqym1L’ ‘~/tmp/scratch/xvfb-run.gypfQA’
‘~/tmp/scratch/xvfb-run.ivs47T’ ‘~/tmp/scratch/xvfb-run.k6oIkK’
‘~/tmp/scratch/xvfb-run.lFquzy’ ‘~/tmp/scratch/xvfb-run.lhk3uZ’
‘~/tmp/scratch/xvfb-run.lzVG9v’ ‘~/tmp/scratch/xvfb-run.m5sOMQ’
‘~/tmp/scratch/xvfb-run.mUxCei’ ‘~/tmp/scratch/xvfb-run.nHDliI’
‘~/tmp/scratch/xvfb-run.onymQ3’ ‘~/tmp/scratch/xvfb-run.pShGlv’
‘~/tmp/scratch/xvfb-run.q12LxE’ ‘~/tmp/scratch/xvfb-run.qf1SJz’
‘~/tmp/scratch/xvfb-run.rSo5SA’ ‘~/tmp/scratch/xvfb-run.rbqday’
‘~/tmp/scratch/xvfb-run.rvmWNf’ ‘~/tmp/scratch/xvfb-run.sPwKY7’
‘~/tmp/scratch/xvfb-run.tZ7i9M’ ‘~/tmp/scratch/xvfb-run.v1gqly’
‘~/tmp/scratch/xvfb-run.vLeH34’ ‘~/tmp/scratch/xvfb-run.vuEcQ4’
‘~/tmp/scratch/xvfb-run.w5vqsC’ ‘~/tmp/scratch/xvfb-run.wYwiwz’
‘~/tmp/scratch/xvfb-run.xwsThx’ ‘~/tmp/scratch/xvfb-run.yqjjTu’
‘~/tmp/scratch/xvfb-run.yxmyp0’ ‘~/tmp/scratch/xvfb-run.zb64Rt’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.10
Check: examples
Result: ERROR
Running examples in ‘SATS-Ex.R’ failed
The error most likely occurred in:
> ### Name: GenerateLMatrix
> ### Title: Generate an L Matrix
> ### Aliases: GenerateLMatrix
>
> ### ** Examples
>
> data(SimData, package="SATS")
>
> Panel_context <- GeneratePanelSize(genomic_information=SimData$PanelEx, Class="SBS",
+ SBS_order="COSMIC")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’
Error in myGetSeq(ref.genome, Seq_assay_GRanges) :
Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Calls: GeneratePanelSize -> GeneratePanelSize_SBS -> myGetSeq
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64