Last updated on 2026-03-02 00:50:30 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 14 | ||
| mlr | 2 | 12 | |
| mlr3pipelines | 3 | 11 | |
| mlrMBO | 7 | 7 | |
| paradox | 14 | ||
| ParamHelpers | 14 |
Current CRAN status: OK: 14
Current CRAN status: NOTE: 2, OK: 12
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 11
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-02 10:53:18.193408: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.193637: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.196597: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.202721: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:18.213436: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.213555: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.253109: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.259346: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:18.269201: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.269363: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.274079: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.28802: embedding
> test_pipeop_isomap.R: 2026-03-02 10:53:18.288436: DONE
> test_pipeop_isomap.R: 2026-03-02 10:53:18.294704: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.294859: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.299256: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.3141: embedding
> test_pipeop_isomap.R: 2026-03-02 10:53:18.314475: DONE
> test_pipeop_isomap.R: 2026-03-02 10:53:18.35493: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.355037: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.363481: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.392632: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:18.403082: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.403234: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.410401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.490185: embedding
> test_pipeop_isomap.R: 2026-03-02 10:53:18.491836: DONE
> test_pipeop_isomap.R: 2026-03-02 10:53:18.530774: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.530927: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.533267: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.539336: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:18.54737: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.547553: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.556526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.571807: embedding
> test_pipeop_isomap.R: 2026-03-02 10:53:18.572228: DONE
> test_pipeop_isomap.R: 2026-03-02 10:53:18.610582: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.610726: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.613153: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.619347: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:18.631218: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.63141: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.788524: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.803316: embedding
> test_pipeop_isomap.R: 2026-03-02 10:53:18.803692: DONE
> test_pipeop_isomap.R: 2026-03-02 10:53:18.821351: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.821475: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.823663: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.829656: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:18.840152: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.84031: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.844899: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.859444: embedding
> test_pipeop_isomap.R: 2026-03-02 10:53:18.85976: DONE
> test_pipeop_isomap.R: 2026-03-02 10:53:18.878202: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.878341: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.880883: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.88693: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:18.898441: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.898618: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.903116: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.917605: embedding
> test_pipeop_isomap.R: 2026-03-02 10:53:18.917957: DONE
> test_pipeop_isomap.R: 2026-03-02 10:53:18.936298: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.936421: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.938765: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.944783: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:18.955472: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.955638: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:18.965623: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:18.980225: embedding
> test_pipeop_isomap.R: 2026-03-02 10:53:18.98057: DONE
> test_pipeop_isomap.R: 2026-03-02 10:53:18.999638: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:18.999748: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:19.001708: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:19.007076: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:19.022847: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:19.022976: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:19.025185: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:19.03123: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 10:53:19.036793: Isomap START
> test_pipeop_isomap.R: 2026-03-02 10:53:19.036917: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 10:53:19.039166: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 10:53:19.045298: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [257s/218s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-01 15:58:57.413118: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:58:57.413614: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:57.424328: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:57.441827: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:58:57.480054: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:58:57.480349: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:57.486971: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:57.514957: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:58:57.54148: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 15:58:57.541909: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:57.557229: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:57.608216: embedding
> test_pipeop_isomap.R: 2026-03-01 15:58:57.60936: DONE
> test_pipeop_isomap.R: 2026-03-01 15:58:57.632878: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 15:58:57.633198: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:57.722443: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:57.775471: embedding
> test_pipeop_isomap.R: 2026-03-01 15:58:57.776659: DONE
> test_pipeop_isomap.R: 2026-03-01 15:58:57.865819: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:58:57.866128: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:57.89291: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:58.030432: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:58:58.07462: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 15:58:58.075041: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:58.114805: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:58.354433: embedding
> test_pipeop_isomap.R: 2026-03-01 15:58:58.358782: DONE
> test_pipeop_isomap.R: 2026-03-01 15:58:58.505334: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:58:58.505697: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:58.513088: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:58.531815: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:58:58.563488: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 15:58:58.563937: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:58.580333: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:58.622985: embedding
> test_pipeop_isomap.R: 2026-03-01 15:58:58.624151: DONE
> test_pipeop_isomap.R: 2026-03-01 15:58:58.746722: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:58:58.747: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:58.756619: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:58.794822: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:58:58.848973: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 15:58:58.849377: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:58.876658: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:58.981545: embedding
> test_pipeop_isomap.R: 2026-03-01 15:58:58.98544: DONE
> test_pipeop_isomap.R: 2026-03-01 15:58:59.109952: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:58:59.110251: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:59.1169: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:59.152134: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:58:59.214035: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 15:58:59.214715: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:59.240717: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:59.301606: embedding
> test_pipeop_isomap.R: 2026-03-01 15:58:59.302671: DONE
> test_pipeop_isomap.R: 2026-03-01 15:58:59.392052: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:58:59.39236: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:59.398849: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:59.429019: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:58:59.497883: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 15:58:59.498313: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:59.520182: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:59.594595: embedding
> test_pipeop_isomap.R: 2026-03-01 15:58:59.595741: DONE
> test_pipeop_isomap.R: 2026-03-01 15:58:59.696564: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:58:59.696853: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:59.703481: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:59.733994: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:58:59.810001: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 15:58:59.811485: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:58:59.862799: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:58:59.931618: embedding
> test_pipeop_isomap.R: 2026-03-01 15:58:59.932804: DONE
> test_pipeop_isomap.R: 2026-03-01 15:59:00.054551: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:59:00.054837: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:59:00.068039: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:59:00.092033: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:59:00.188967: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:59:00.189274: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:59:00.202661: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:59:00.224766: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 15:59:00.254983: Isomap START
> test_pipeop_isomap.R: 2026-03-01 15:59:00.255267: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 15:59:00.264605: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 15:59:00.289442: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_spatialsign.R:3:1', 'test_pipeop_splines.R:3:1',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in 'mlr3pipelines-Ex.R' failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavor: r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [294s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-25 16:53:35.175809: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.176823: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.190077: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.212139: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.291769: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.292485: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.305269: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.327881: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.375384: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.376312: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.41152: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.455348: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:35.457078: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:35.504244: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.505022: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.525146: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.575999: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:35.577889: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:35.712001: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.712591: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.736012: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.841057: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.879798: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.880448: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.004977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.243402: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:36.250602: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:36.487825: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.488453: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.498584: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.521234: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:36.569843: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.570687: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.593: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.64245: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:36.64431: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:36.858807: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.859413: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.870062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.893007: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:36.96995: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.970851: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.995393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.047838: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.050014: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.191469: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.192106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.203523: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.224898: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.301394: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.302275: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.323626: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.360074: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.361463: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.492268: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.492909: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.502373: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.522678: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.594993: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.595875: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.617954: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.667016: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.668821: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.775062: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.775654: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.788062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.810837: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.893541: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.894448: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.916797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.954928: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.955997: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:38.059554: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.059993: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.067583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.08821: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:38.197578: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.198193: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.209329: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.225198: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:38.250183: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.250623: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.257674: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.277822: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 7, OK: 7
Version: 1.1.5.1
Check: Rd files
Result: NOTE
checkRd: (-1) MBOMultiObjResult.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:11-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:9-11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:13-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:18-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mbo_parallel.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mbo_parallel.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setMBOControlMultiObj.Rd:119-120: Lost braces
119 | Notes in Computer Science, ISBN 978-3-642-37139-4, pp. 756{770,
| ^
checkRd: (-1) trafos.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) trafos.Rd:29: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14